RetrogeneDB ID: | retro_pvam_1133 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_3156:124272..124836(-) | ||
Located in intron of: | ENSPVAG00000017895 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1 | ||
Ensembl ID: | ENSPVAG00000000322 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:5031] |
Percent Identity: | 68.75 % |
Parental protein coverage: | 51.47 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA |
SKSESPKEP.Q..KLFI..L.FETT..SLRSH..QWGTLTD.VVMR.PNTK.SRG.GFV.YATVE.VD.A | |
Retrocopy | SKSESPKEPKQPWKLFIKSLRFETTSKSLRSHYKQWGTLTDYVVMRNPNTKYSRGSGFVMYATVE-VDEA |
Parental | MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG |
MNARPHK.DGRVV.PKRAVSREDSQR.GA.....KIF............LRDYFEQYGK.EVI..MTD.. | |
Retrocopy | MNARPHKMDGRVVKPKRAVSREDSQRYGA-TQLRKIFLL-VELKIMKNYLRDYFEQYGKTEVIK-MTDHC |
Parental | SGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQ |
.GKKRG.AFVTFDDHDSVDK.VI.K.HTV.GHNCEV...LSK......S... | |
Retrocopy | NGKKRGSAFVTFDDHDSVDKTVILKCHTVDGHNCEVKPYLSKRWLMFHSAKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |