RetrogeneDB ID: | retro_cfam_1460 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 32:1403437..1404249(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000008662 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000019472 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.56 % |
Parental protein coverage: | 95.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | GGPGMGGRGGFRGGFGSGIRGRGRGRGRGR-GRGRGARGGKAEDKEWIPVTKLGRLVKDMKIK-SLEEIY |
GGPGMGG....RGGFGS.IRGRGRGRGRGR.G.GRGA.....EDKEWIPVT.LGRLVKDMKI...LEE.. | |
Retrocopy | GGPGMGG----RGGFGSSIRGRGRGRGRGR<GGGRGA----PEDKEWIPVTGLGRLVKDMKIR<ALEESC |
Parental | LFSLPIKESEIIDFFLGASLK-DEVLKIMPVQKQT-RAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATA |
LFSLPIKES.I.DFFLGAS....EVLKIMPVQKQT.RAG..TRFKAFVAIGD.NG.VG.GVKCSKE.ATA | |
Retrocopy | LFSLPIKESGITDFFLGASSPTEEVLKIMPVQKQT<RAGPWTRFKAFVAIGDDNGQVGPGVKCSKEAATA |
Parental | IRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGID |
IRGA.ILAKLSI.PV.RGYWGN.I.KPHTVP.KVTGRCGSVLVRLIPAPRGTG.VSAPVPKKLLMMAGID | |
Retrocopy | IRGAVILAKLSILPVPRGYWGNEIRKPHTVPGKVTGRCGSVLVRLIPAPRGTGFVSAPVPKKLLMMAGID |
Parental | DCYTSARGCTAT-LGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA |
DCYTSARG.TAT.LGNFAKATFDAISKT.SYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA | |
Retrocopy | DCYTSARGHTAT<LGNFAKATFDAISKTHSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA |
Parental | VATT |
VATT | |
Retrocopy | VATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 405 .33 RPM |
SRP017611_brain | 0 .00 RPM | 141 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 1239 .39 RPM |
SRP017611_liver | 0 .00 RPM | 306 .08 RPM |