RetrogeneDB ID: | retro_cpor_437 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_151:568166..568827(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000011651 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 57.94 % |
Parental protein coverage: | 81.23 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 6 |
Parental | LVKDMKIKSLEEIYLFSLPIKESEII-DFFLGTSLKDEVLKIMPVQKQTRAG-QRTRFKAFVAIGDYNGH |
...DMKIKSL.....F.LP........DFFL..SLKD..LK..P.QKQT.A..Q.TRFKA.V..G.YNG. | |
Retrocopy | MLQDMKIKSLRT---FLLPLSVKSLR>DFFLDSSLKDQILKTTPIQKQTCAV<QWTRFKASVSTGNYNGQ |
Parental | VGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVP-CKVTGR--CGSVL-VRLIPAPRGT |
.GL..K....VATAI.G...LAK.....V..GYW.NKI.K..TVP.CKVTG...C.SV..V...PAPRGT | |
Retrocopy | TGLNTKYPRKVATAIQGVNMLAKSATILVQGGYWANKISKRQTVP>CKVTGHCGCASVG<VHVTPAPRGT |
Parental | GIVSAPVPKKLLMMAGIDDCYTSA-RGCTATLGNFAKATFDAISKTYS-YLTPDLWKETVFTKSPYQEFT |
G...A....KLL.MA..DDC..SA.RG..ATL....K.T..AISKTY..YLTPDLWK.T.FT.SPYQEFT | |
Retrocopy | GAIYA---LKLLQMAATDDCCISA<RGRLATLDIYVKSTLAAISKTYP<YLTPDLWKVTMFTRSPYQEFT |
Parental | DHLVKTHTRVSVQRTQAPAVATT |
DHLVKTH...SVQRTQA.A..TT | |
Retrocopy | DHLVKTHKGISVQRTQASAAVTT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 223 .91 RPM |
SRP017611_kidney | 0 .00 RPM | 288 .62 RPM |
SRP017611_liver | 0 .04 RPM | 204 .01 RPM |
SRP040447_lung | 0 .00 RPM | 346 .71 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 660 .71 RPM |