RetrogeneDB ID: | retro_pcap_433 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_8605:25635..26243(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSPCAG00000002090 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 61.61 % |
Parental protein coverage: | 70.99 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | SLPIKESEIIDFFLGMALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGD-YNGHVGLGVKCS-KEVATAIR |
S.PIK.SEI.D.FLG.A.K..VLK..P.QK.TR..Q.TRFKA..AI.D..NGH.G.GVK.S.KE..T.IR | |
Retrocopy | SQPIK*SEITDYFLGTANKERVLKARPLQKPTRC-QLTRFKAVLAIED>NNGHAGPGVKGS<KEGRT-IR |
Parental | GAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDC |
.AII..K.SI..V.RG...NK..K.H.VPCKVT..C.SVLV.LI.APR.TG.V.APV..K.L.MA.ID.C | |
Retrocopy | KAIIVVKFSIYSVWRGC*ENKVNKGHIVPCKVTSHCDSVLVLLIQAPRSTGVVAAPVLEKQLIMASIDYC |
Parental | YTSARGCTATL-GNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVA |
.TS....TATL.G...KATF..ISKTYS.LT.D.W..TV.TKSP...F.D..VKTHTRVS.Q.TQA.AVA | |
Retrocopy | HTSTSDSTATL<GHLPKATFGDISKTYSCLTTDFW*GTVVTKSP---FIDCHVKTHTRVSTQETQASAVA |
Parental | T |
T | |
Retrocopy | T |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |