RetrogeneDB ID: | retro_cpor_808 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_29:18606249..18606812(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000011651 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.5 % |
Parental protein coverage: | 70.76 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | VTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFL-GTSLKDEVLKIMPVQKQTRAGQRTRFKA-FVAI |
.T....LVKD.KIKSLE.IYLF.L.IKE.E.IDFFL.GT..KD.VLKIMP..KQT.A.Q.T.F...FV.I | |
Retrocopy | LTPM*ALVKDVKIKSLE*IYLF-LAIKEYEMIDFFL<GTPFKDKVLKIMPIEKQTSAAQKTGFMS<FVSI |
Parental | G-DYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGK-PHTVPCKVTGRCGSVLVRLIPA |
G.DYN..VGLGVKC.KEVA..I..AIILAKL.IV...R.Y.GNKIG...HT..CKVTG.CGSVLV.L.PA | |
Retrocopy | G<DYNSQVGLGVKCFKEVA--IHKAIILAKLPIVSLQRRYQGNKIGR<THTASCKVTGHCGSVLVHLMPA |
Parental | PRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKE |
.RGTGI.......K.L........YTSARGCTATLG.FAKATFDAISK..SYLT.D...E | |
Retrocopy | SRGTGIYCLIPVPKKLLLMA----YTSARGCTATLGSFAKATFDAISKA*SYLTSDPYQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 223 .91 RPM |
SRP017611_kidney | 0 .00 RPM | 288 .62 RPM |
SRP017611_liver | 0 .00 RPM | 204 .01 RPM |
SRP040447_lung | 0 .00 RPM | 346 .71 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 660 .71 RPM |