RetrogeneDB ID: | retro_cpor_1376 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_76:6998697..6999287(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000011651 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75. % |
Parental protein coverage: | 72.2 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | SGRARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIID-FFLGTSLKDEVLKIMPVQKQ |
S.RAR...A..KEWIPVT.LG.LVK.MKIKSLEE.YLFS...KES.I.D..FLGTS.KDEVLKI.PVQKQ | |
Retrocopy | SRRARSATAKAKEWIPVTILGQLVKGMKIKSLEELYLFS*HTKES*ITD<LFLGTSPKDEVLKITPVQKQ |
Parental | TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKE-VATAIRG-AIILAKLSIVPVRRGYWGNKIGKPHTVPCK |
..AGQRTRFK.F...GDYN.H.GLGVKCSKE.VATAIRG.AI.LAKLS.VP..RGY.GNK.GKPHTVPCK | |
Retrocopy | AHAGQRTRFKVFITNGDYNDHIGLGVKCSKE<VATAIRG<AIFLAKLSTVPGCRGYSGNKTGKPHTVPCK |
Parental | VTGRCGSVLV-RLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISK |
VTG.C.SV....LIPAPRGTGI...P.PKKLL.MAG.DDC..SARGCTATLGNFAKATF..ISK | |
Retrocopy | VTGLCDSVVA<SLIPAPRGTGI--TPGPKKLLLMAGTDDC*ISARGCTATLGNFAKATFEVISK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 223 .91 RPM |
SRP017611_kidney | 0 .10 RPM | 288 .62 RPM |
SRP017611_liver | 0 .00 RPM | 204 .01 RPM |
SRP040447_lung | 0 .10 RPM | 346 .71 RPM |
SRP040447_skeletal_muscle | 0 .03 RPM | 660 .71 RPM |