RetrogeneDB ID: | retro_cfam_323 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 1:85827753..85828431(-) | ||
Located in intron of: | ENSCAFG00000001821 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000019472 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.95 % |
Parental protein coverage: | 77.82 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 6 |
Parental | GKAEDKEWI-PVTKLGRLVKDMKIKS-LEEIYLFSLPIKESEIIDFFLG-ASLKDEVLKIMPVQKQTRAG |
GK.EDKEWI.PVTKLGRLVKDMKIKS.LEEIY.F.LP.KESEI.D.FLG..SLKDEVLK...VQKQ.RAG | |
Retrocopy | GKVEDKEWI<PVTKLGRLVKDMKIKS<LEEIYFFFLPVKESEITDLFLG<VSLKDEVLKTILVQKQPRAG |
Parental | QRTRFKAFVAIGDYN-GHVGLGVKCSKEVATAIRGAIILAKLSI-VPVRRGYWGNKIGKPHTVPCKVTGR |
Q..RFKAFVAI.....GHVGLGVKCS.E.ATAI.GA....KLS...P...GY..NKI.K.H.VPC..T.. | |
Retrocopy | QWNRFKAFVAIRETT<GHVGLGVKCSREMATAICGAMVSVKLST<PPMWQGYLENKISKAHIVPCMMTSC |
Parental | CGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLT-PDLW |
CG................SAP.PKKLLMMAGIDDC..SAR...ATL.NFAKATFDAI..TYS.LT.PDL. | |
Retrocopy | CGCACAPHLCPQGHWHCASAPMPKKLLMMAGIDDC*NSARSHAATLCNFAKATFDAIPNTYSCLT<PDLR |
Parental | KETVFTKSPYQEFTDHLVKTHTRV |
K.T.FTKSP.QEFTDHLV.THTRV | |
Retrocopy | KQTMFTKSPSQEFTDHLVTTHTRV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 405 .33 RPM |
SRP017611_brain | 0 .00 RPM | 141 .00 RPM |
SRP017611_kidney | 0 .07 RPM | 1239 .39 RPM |
SRP017611_liver | 0 .00 RPM | 306 .08 RPM |