RetrogeneDB ID: | retro_cpor_769 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_27:15546435..15546884(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000011651 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.61 % |
Parental protein coverage: | 54.87 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | GRLVKDMKIKSLEEIYLFSLPIKES-EIIDFFLGTSL-KDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYN |
G.L.KDM.I.SLEEI..FSL.I..S.E..DFFLGT.L...EVLKIMP.QKQT.A....RFKAFV.IG.YN | |
Retrocopy | GWLAKDM-ITSLEEISVFSLSIRGS>EMTDFFLGTFL<NSEVLKIMPLQKQTGADLQMRFKAFVTIGNYN |
Parental | GHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKP-HTVPCKVTGRCGSVLVRLI-PAPRGT |
G.V.L..KCS.E.AT...G.IILAKLS.VPV..G..GNK..KP.H.VPCKVTG.CGSVL..LI.PAPR.T | |
Retrocopy | GQVYLVEKCS*EIATIT*GVIILAKLSVVPVKKG*CGNKT-KP<HIVPCKVTGCCGSVLMWLI<PAPRST |
Parental | GIV-SAPVPKKLLMMAG |
GIV...PVP.KLL..AG | |
Retrocopy | GIV>LCPVPRKLLLLAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 223 .91 RPM |
SRP017611_kidney | 0 .00 RPM | 288 .62 RPM |
SRP017611_liver | 0 .00 RPM | 204 .01 RPM |
SRP040447_lung | 0 .05 RPM | 346 .71 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 660 .71 RPM |