RetrogeneDB ID: | retro_vpac_379 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_1416:314467..315214(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSVPAG00000006867 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 84.13 % |
Parental protein coverage: | 98.03 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | RGRGRGARGGKAEDK-WLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLG-ASLKDEVLKIMPV |
R...R.AR.GKAEDK.WLPVT.LG.LVKDMKIKSL.EI.LFSLPIKE.EIID.FLG.ASLKDEVLKIMPV | |
Retrocopy | RSHSRRARRGKAEDKEWLPVTELGHLVKDMKIKSLGEICLFSLPIKEPEIID-FLG>ASLKDEVLKIMPV |
Parental | QKQTRAGQRTRFKAFVAIGDYNGHVG-LGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVP |
.KQT.A.Q..RFKAFVAIGDYNGHVG.LGVKCSKEVATAIRGAI.LAKLSIVPV.RGY.GNK..KPHTVP | |
Retrocopy | *KQTCADQQIRFKAFVAIGDYNGHVG<LGVKCSKEVATAIRGAISLAKLSIVPVQRGY*GNKTCKPHTVP |
Parental | CKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYL |
CKVTG.CGSVLV.LIPAPR..GIVSA.VPK.LL.MAGIDDC.TSARGCT.TL.NFAK.TFDAISKTYSYL | |
Retrocopy | CKVTGCCGSVLVCLIPAPRDAGIVSASVPKMLLLMAGIDDCSTSARGCTTTLANFAKVTFDAISKTYSYL |
Parental | TPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT |
T.DLW.ETVFTKSPYQ.FTDH..KTHTRVSVQRTQAPAVATT | |
Retrocopy | TLDLWRETVFTKSPYQ*FTDHFIKTHTRVSVQRTQAPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |