RetrogeneDB ID: | retro_btau_590 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 15:21300715..21301159(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSBTAG00000009535 | ||
Aliases: | RPS2, RPS2E | ||
Description: | 40S ribosomal protein S2 [Source:UniProtKB/Swiss-Prot;Acc:O18789] |
Percent Identity: | 99.32 % |
Parental protein coverage: | 50.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLM |
EVATAIRGAIILAKLSI.PVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLM | |
Retrocopy | EVATAIRGAIILAKLSIIPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLM |
Parental | MAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRT |
MAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRT | |
Retrocopy | MAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRT |
Parental | QAPAVATT |
QAPAVATT | |
Retrocopy | QAPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 2 .02 RPM | 219 .82 RPM |
ERP005899_muscle | 6 .76 RPM | 2816 .03 RPM |
SRP017611_brain | 0 .59 RPM | 311 .85 RPM |
SRP017611_kidney | 1 .07 RPM | 854 .10 RPM |
SRP017611_liver | 0 .76 RPM | 655 .49 RPM |
SRP030211_testis | 1 .13 RPM | 501 .90 RPM |