RetrogeneDB ID: | retro_vpac_220 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_2957:1194729..1195272(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSVPAG00000006867 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 87.85 % |
Parental protein coverage: | 71.26 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | QKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPC |
QKQTRAGQRTRFKAFV..GDYNG.VGLGVKCSKEVATAI.GAI.LAKLSIVPV..G.WGNK.G.PHTVPC | |
Retrocopy | QKQTRAGQRTRFKAFVTTGDYNGLVGLGVKCSKEVATAIQGAITLAKLSIVPVW*GCWGNKMGEPHTVPC |
Parental | KVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLT |
KVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLL.MAGIDDC.TSARGC.A.LG.FAKATF.AISKTYSYLT | |
Retrocopy | KVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLLMAGIDDCHTSARGCAAMLGHFAKATFHAISKTYSYLT |
Parental | PDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT |
P.LWKE.VFTKSP.QEFTD.LVK.HT.VSVQRTQAPAVATT | |
Retrocopy | PHLWKEPVFTKSPCQEFTDRLVKSHTSVSVQRTQAPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |