RetrogeneDB ID: | retro_rnor_681 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 10:38426566..38427443(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps2 | ||
Ensembl ID: | ENSRNOG00000014179 | ||
Aliases: | Rps2, Rps2r1 | ||
Description: | 40S ribosomal protein S2 [Source:UniProtKB/Swiss-Prot;Acc:P27952] |
Percent Identity: | 89.83 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MADDAGAAGGPGGPGGPGLGGRGGFRGGFGSGLRGRGRGRGRGRGRGRGARGGKAEDKEWIPVTKLGRLV |
MADDAGAAGGP.G..GPGLGG.G.FRGGF..GLRG.GRG.G.GRGRGR.ARG.KAEDKEWIP.TKLG.LV | |
Retrocopy | MADDAGAAGGPRGLRGPGLGGNGSFRGGFSRGLRGQGRGPGHGRGRGRRARGSKAEDKEWIPFTKLGHLV |
Parental | KDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLG |
KDMKIKSLEEIYLFSLPIK.SEIIDFFLGASLK.EVLK.MPVQKQTRAGQ.TRFKAFV.IGD.N.HVGLG | |
Retrocopy | KDMKIKSLEEIYLFSLPIKGSEIIDFFLGASLKNEVLKTMPVQKQTRAGQWTRFKAFVSIGD*NDHVGLG |
Parental | VKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVP |
VKCSKEVATAIRGAII.AKLSIVP.RRGYWGNKIGKPHTVPCKVTGRCGSVLVRL..APRGTGIVSAPVP | |
Retrocopy | VKCSKEVATAIRGAIIMAKLSIVPLRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLFSAPRGTGIVSAPVP |
Parental | KKLLMMA-GIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL-VKTHT |
KKLLMMA..IDDCYT.ARGCTATLGNFAKATFDAISK.YSYLTPDLWKETVFTKSPYQEFTDHL.VKTHT | |
Retrocopy | KKLLMMA<RIDDCYTLARGCTATLGNFAKATFDAISKIYSYLTPDLWKETVFTKSPYQEFTDHL<VKTHT |
Parental | RVSVQRTQAPAVATT |
RVSVQRTQAPAVATT | |
Retrocopy | RVSVQRTQAPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 122 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 209 .07 RPM |
SRP017611_liver | 0 .00 RPM | 159 .89 RPM |