RetrogeneDB ID: | retro_cfam_629 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 14:21397106..21397985(-) | ||
Located in intron of: | ENSCAFG00000002161 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000019472 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.4 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MADDAGAAGGPGGPGGPGMGGRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEWIPVTKLGRLV |
MADDAGAAGGPG.PGGPG.GG.GGF.GGFGSG.................ARGG.AEDKEWI.VTKLGRLV | |
Retrocopy | MADDAGAAGGPGDPGGPGRGGHGGFHGGFGSGXXXXXXXXXXXXXXXXXARGG*AEDKEWISVTKLGRLV |
Parental | KDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLG |
KDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI.P.QKQT.AGQ.TRFKAFVAIGDYN.HVGLG | |
Retrocopy | KDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKILPLQKQTPAGQWTRFKAFVAIGDYNVHVGLG |
Parental | VKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVP |
.KCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTG.CGSVLV.LIPAPRGTGIVSAPVP | |
Retrocopy | LKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGCCGSVLVHLIPAPRGTGIVSAPVP |
Parental | KKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRV |
KKLLMMAGIDDCYT.ARGCTATLGNFAKATFDAISKTYSYLTPDLWKE.VFTKSPYQEFTDHLVKTHTRV | |
Retrocopy | KKLLMMAGIDDCYT*ARGCTATLGNFAKATFDAISKTYSYLTPDLWKESVFTKSPYQEFTDHLVKTHTRV |
Parental | SVQRTQAPAVATT |
S.QRTQAPAVATT | |
Retrocopy | SMQRTQAPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .21 RPM | 405 .33 RPM |
SRP017611_brain | 0 .24 RPM | 141 .00 RPM |
SRP017611_kidney | 1 .12 RPM | 1239 .39 RPM |
SRP017611_liver | 1 .67 RPM | 306 .08 RPM |