RetrogeneDB ID: | retro_cjac_2536 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 5:75345356..75345670(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000013103 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TXN | ||
Ensembl ID: | ENSCJAG00000017321 | ||
Aliases: | LOC100413131, TXN, trx | ||
Description: | Thioredoxin [Source:UniProtKB/Swiss-Prot;Acc:Q9BDJ3] |
Percent Identity: | 87.74 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MVKQIDSKDAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVVFLEVDVDDCQDVASEC |
MVKQIDSK.AFQEALD.AG.KLVVVDFSA.WCGPCKMIKP.FHS.SEK..SNVVF.EVDVDD.QDVASEC | |
Retrocopy | MVKQIDSKVAFQEALDTAGNKLVVVDFSARWCGPCKMIKPCFHSPSEKH<SNVVFFEVDVDDHQDVASEC |
Parental | EVKCMPTFQFFKKGQKVGEFSGANKEKLEATINEFV |
EVKCMPTFQFFKKGQKVGE..GANKEKLEATINE.V | |
Retrocopy | EVKCMPTFQFFKKGQKVGELPGANKEKLEATINELV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .02 RPM | 75 .88 RPM |
SRP051959_heart | 0 .14 RPM | 15 .17 RPM |
SRP051959_kidney | 0 .91 RPM | 38 .87 RPM |
SRP051959_liver | 0 .15 RPM | 43 .93 RPM |
SRP051959_lung | 0 .00 RPM | 29 .35 RPM |
SRP051959_lymph_node | 0 .00 RPM | 22 .08 RPM |
SRP051959_skeletal_muscle | 0 .13 RPM | 7 .82 RPM |
SRP051959_spleen | 0 .02 RPM | 21 .18 RPM |