RetrogeneDB ID: | retro_fcat_1105 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:93986618..93986807(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TXN | ||
Ensembl ID: | ENSFCAG00000004790 | ||
Aliases: | None | ||
Description: | thioredoxin [Source:HGNC Symbol;Acc:12435] |
Percent Identity: | 69.23 % |
Parental protein coverage: | 58.1 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LSEKYSNVVFL--EVDVDDCQDVASECEV-KCMPTFQFFKKGQKVGE-FSGANKEKLEATINELI |
LS.K......L..EVDVDD.QDVAS.C.V..C.PTFQ.F.KGQKVGE.FSGAN.EKLEA.INELI | |
Retrocopy | LSGKSPSAMYLKVEVDVDDHQDVASGC*V<HCKPTFQCFQKGQKVGE>FSGANMEKLEADINELI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 26 .51 RPM |
SRP017611_kidney | 0 .00 RPM | 87 .70 RPM |
SRP017611_liver | 0 .00 RPM | 79 .86 RPM |