RetrogeneDB ID: | retro_fcat_1096 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:75149693..75150009(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000031834 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TXN | ||
Ensembl ID: | ENSFCAG00000004790 | ||
Aliases: | None | ||
Description: | thioredoxin [Source:HGNC Symbol;Acc:12435] |
Percent Identity: | 83.02 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LIRALENKYAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECE |
.....E.KYAFQEALNSAGEKLVVVDF.A.WCGPCK.IKPFFHS.S.KYSN..FLE.DVDDC.DVASECE | |
Retrocopy | MVKQIESKYAFQEALNSAGEKLVVVDF*AMWCGPCKTIKPFFHSFSDKYSNMAFLEADVDDCWDVASECE |
Parental | V-KCMPTFQFFKKGQKVGEFSGANKEKLEATINELI |
V.KCMPTFQFFKKGQKVGE.SGA.KEKLEATINELI | |
Retrocopy | V>KCMPTFQFFKKGQKVGELSGASKEKLEATINELI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 26 .51 RPM |
SRP017611_kidney | 1 .03 RPM | 87 .70 RPM |
SRP017611_liver | 0 .81 RPM | 79 .86 RPM |