RetrogeneDB ID: | retro_fcat_2025 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:122811545..122811866(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TXN | ||
Ensembl ID: | ENSFCAG00000004790 | ||
Aliases: | None | ||
Description: | thioredoxin [Source:HGNC Symbol;Acc:12435] |
Percent Identity: | 71.03 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LIRALENKYAFQEALNSAG-EKLVVVDFSATWCGPC-KMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASE |
.......KYAFQE.LNSAG..KLVV.D..A..CGP.......FFH.LS.KYSN..FLEVDVDDCQDVASE | |
Retrocopy | MVKQIKSKYAFQEDLNSAGLPKLVVIDLLAMLCGPALQKDQVFFHCLSDKYSNISFLEVDVDDCQDVASE |
Parental | CEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINELI |
.EVK.MPTFQFFKKG.KVGEFSG.NKEKLEATIN.LI | |
Retrocopy | REVKGMPTFQFFKKG*KVGEFSGDNKEKLEATIN*LI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 26 .51 RPM |
SRP017611_kidney | 0 .00 RPM | 87 .70 RPM |
SRP017611_liver | 0 .00 RPM | 79 .86 RPM |