RetrogeneDB ID: | retro_cpor_55 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_100:3294982..3295300(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000024255 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000015348 | ||
Aliases: | None | ||
Description: | Thioredoxin [Source:UniProtKB/TrEMBL;Acc:H0VT53] |
Percent Identity: | 93.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVQQIESKEAFQEALNDAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECE |
MV.QIESKEAFQEALNDAGDKLVV.DFSATWCGPC.M.KPFFHSLS.KYSN.VFLEVDVDDCQDVAAECE | |
Retrocopy | MVPQIESKEAFQEALNDAGDKLVVADFSATWCGPCNMTKPFFHSLSGKYSNAVFLEVDVDDCQDVAAECE |
Parental | VKCMPTFQFFKKGKKVSEFSGANKEKLEATINELV |
VK.MPTFQFFKKGKKVSEFSGANKEKLEATINELV | |
Retrocopy | VKYMPTFQFFKKGKKVSEFSGANKEKLEATINELV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .87 RPM |
SRP017611_kidney | 0 .00 RPM | 72 .97 RPM |
SRP017611_liver | 0 .04 RPM | 128 .40 RPM |
SRP040447_lung | 0 .03 RPM | 65 .04 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 24 .32 RPM |