RetrogeneDB ID: | retro_pabe_1428 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 17:4487792..4488153(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TXN | ||
Ensembl ID: | ENSPPYG00000019491 | ||
Aliases: | None | ||
Description: | thioredoxin [Source:RefSeq peptide;Acc:NP_001125903] |
Percent Identity: | 81.3 % |
Parental protein coverage: | 55. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | PFPSVLTAARQTPAAKMVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCK-MIKPFF-HSLSEKYSNV |
P......AA.QT.AAKMVKQIESK.AF.EALD..G.K.VVVDFSATWCGPCK.MIKPFF...LS.KYSNV | |
Retrocopy | PIXXXXXAAHQTSAAKMVKQIESKLAF*EALDVTGGKRVVVDFSATWCGPCK<MIKPFF<YPLSGKYSNV |
Parental | IFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINELV |
.FLEVDVDDCQDVASECE.KCMPTFQFFKKGQKVGEFSGA.KEKLEATI.ELV | |
Retrocopy | VFLEVDVDDCQDVASECEAKCMPTFQFFKKGQKVGEFSGAHKEKLEATIHELV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 45 .12 RPM |
SRP007412_cerebellum | 0 .00 RPM | 47 .30 RPM |
SRP007412_heart | 0 .00 RPM | 21 .98 RPM |
SRP007412_kidney | 0 .10 RPM | 76 .90 RPM |
SRP007412_liver | 0 .00 RPM | 62 .67 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1713 |
Pan troglodytes | retro_ptro_1158 |
Gorilla gorilla | retro_ggor_1283 |