RetrogeneDB ID: | retro_cpor_900 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_32:8664623..8664987(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSCPOG00000002253 | ||
Aliases: | None | ||
Description: | Ribosomal protein L15 [Source:UniProtKB/TrEMBL;Acc:H0UY44] |
Percent Identity: | 57.38 % |
Parental protein coverage: | 59.31 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 1 |
Parental | ALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEE |
AL.R...P...DKA..LGYKA.Q.....RI.V..G..K.PVPK.A...KPV.HG.NQL.F..SL..VA.E | |
Retrocopy | ALRRTFCPAW*DKACGLGYKAMQA*AT*RIHVHYGALKHPVPKDAA*RKPVQHGINQLTFS*SLWAVAVE |
Parental | RAGRHCGALRVLNS-YWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPV |
.A...C.A...LNS..W.GEDS.Y.FFEVI.ID.FHKA.R.NPDTQ.I.KPV | |
Retrocopy | LARYQCRA*KILNS>NWFGEDSMYRFFEVIIIDLFHKATRSNPDTQGIIKPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 106 .98 RPM |
SRP017611_kidney | 0 .00 RPM | 145 .52 RPM |
SRP017611_liver | 0 .00 RPM | 90 .88 RPM |
SRP040447_lung | 0 .00 RPM | 229 .18 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 285 .11 RPM |