RetrogeneDB ID: | retro_ocun_228 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 18:3946682..3947297(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000026012 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000010961 | ||
Aliases: | None | ||
Description: | Ribosomal protein L15 [Source:UniProtKB/TrEMBL;Acc:G1T0C1] |
Percent Identity: | 98.53 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG |
MGAYKYIQELWRKKQSD.MRFLLRVRCWQYRQLSALHRAPRPTRPDKA.RLGYKAKQGYVIYRIRVRRGG | |
Retrocopy | MGAYKYIQELWRKKQSDMMRFLLRVRCWQYRQLSALHRAPRPTRPDKAHRLGYKAKQGYVIYRIRVRRGG |
Parental | RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHK |
RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILI.PFHK | |
Retrocopy | RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILINPFHK |
Parental | AIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR |
AIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR | |
Retrocopy | AIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .17 RPM | 154 .69 RPM |
SRP017611_kidney | 0 .10 RPM | 127 .71 RPM |
SRP017611_liver | 0 .08 RPM | 31 .45 RPM |