RetrogeneDB ID: | retro_ggor_2029 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 4:48151324..48151932(+) | ||
Located in intron of: | ENSGGOG00000011143 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000174748 | ||
Ensembl ID: | ENSGGOG00000024274 | ||
Aliases: | None | ||
Description: | Ribosomal protein L15 [Source:UniProtKB/TrEMBL;Acc:G3SD81] |
Percent Identity: | 89.22 % |
Parental protein coverage: | 99.51 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG |
MGAYKYIQELWRKKQSDV..FLLRV.CWQYRQLSALHRAPRPTRPDKAR.LGYKAKQGYVI.RI.VRRGG | |
Retrocopy | MGAYKYIQELWRKKQSDVTLFLLRVPCWQYRQLSALHRAPRPTRPDKARQLGYKAKQGYVIHRICVRRGG |
Parental | RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHK |
RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGAL.VLNSYWVGEDST.KFFE.ILIDPFH. | |
Retrocopy | RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALGVLNSYWVGEDST*KFFEAILIDPFHN |
Parental | AIRRNPDTQ-WITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRY |
..RRNPDT..WIT.PVHKHREM.GLTSAG.KSRGL.KGHKFH.TI.GSR.AAWRR.NTLQLHRY | |
Retrocopy | TTRRNPDTH<WITEPVHKHREMCGLTSAGQKSRGL*KGHKFHNTISGSRQAAWRRCNTLQLHRY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 228 .50 RPM |
SRP007412_cerebellum | 0 .04 RPM | 228 .23 RPM |
SRP007412_heart | 0 .06 RPM | 40 .15 RPM |
SRP007412_kidney | 0 .08 RPM | 240 .79 RPM |
SRP007412_liver | 0 .29 RPM | 203 .88 RPM |
SRP007412_testis | 0 .10 RPM | 229 .16 RPM |