RetrogeneDB ID: | retro_ecab_611 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 23:165466..165767(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TIMM17A | ||
Ensembl ID: | ENSECAG00000021816 | ||
Aliases: | None | ||
Description: | translocase of inner mitochondrial membrane 17 homolog A (yeast) [Source:HGNC Symbol;Acc:17315] |
Percent Identity: | 87.25 % |
Parental protein coverage: | 59.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GLFSMIDCSMVQVRGKED-PWNSITSGALTGAILAARNGPVAMVGSAAVGGILLALIEGAGILLTRFASA |
G..SMID.SMVQVRGKED.PWNSITSGALTGAILA.RNGPVAMVGSA..GGILLAL.EGAGI.LTRFASA | |
Retrocopy | GELSMIDSSMVQVRGKED>PWNSITSGALTGAILARRNGPVAMVGSATMGGILLALTEGAGI-LTRFASA |
Parental | QFPNGPQFAEDPSQLPAAQLPSSPFGDYRQYQ |
QFP.GPQFAE.PSQLP.AQLPSSPFGDY.QYQ | |
Retrocopy | QFPSGPQFAENPSQLPSAQLPSSPFGDYQQYQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 32 .94 RPM |
SRP021940_cerebellum | 0 .00 RPM | 31 .00 RPM |
SRP021940_embryo | 0 .00 RPM | 29 .82 RPM |
SRP021940_placental_villous | 0 .00 RPM | 25 .50 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 22 .95 RPM |
SRP021940_testis | 0 .00 RPM | 33 .12 RPM |