RetrogeneDB ID: | retro_ocun_1293 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 7:24925468..24925770(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000024293 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TIMM17A | ||
Ensembl ID: | ENSOCUG00000007498 | ||
Aliases: | None | ||
Description: | translocase of inner mitochondrial membrane 17 homolog A (yeast) [Source:HGNC Symbol;Acc:17315] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 58.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SFAVWGG-LFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILL |
.FAVW.G.LFSM..CSMVQVRGK.D.WN..T.GALTGAIL.ARNGPVAM..S..M..ILL.L.E..GILL | |
Retrocopy | TFAVWRG<LFSMCKCSMVQVRGKQDSWNPMTDGALTGAILIARNGPVAMKDSTVMSDILLDLTERVGILL |
Parental | TRFASAQFPNGPQ-FAEDPSQLPSAQLPSSPF |
T.FASA.F.NG.Q..AED..QL.S..LP.S.F | |
Retrocopy | TGFASARFSNGLQTIAEDFYQLLSTHLPFSSF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 34 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 23 .92 RPM |
SRP017611_liver | 0 .00 RPM | 2 .70 RPM |