Parental gene:

TIMM17A, ENSECAG00000021816

Aliases:None
Description:translocase of inner mitochondrial membrane 17 homolog A (yeast) [Source:HGNC Symbol;Acc:17315]
Organism:Horse (Equus caballus)
Coordinates:30:28908590..28919141(+)


>ENSECAG00000021816
GAAGAGTACGTTCGGGAGCCGTGCCCCTGGCGAATTGTGGATGACTGTGGTGGGGCCTTTACGATGGGCACCATAGGTGG
TGGTATCTTTCAAGCAATCAAAGGCTTTCGCAATTCTCCGGTGGGAGTGAACCACAGACTGCGCGGGAGTTTGACAGCTA
TTAAAACCAGAGCTCCCCAGCTGGGAGGTAGCTTTGCAGTTTGGGGAGGTCTGTTTTCCATGATCGACTGCAGTATGGTT
CAGGTCAGAGGGAAGGAGGACCCCTGGAACTCCATCACAAGTGGTGCCTTAACAGGAGCCATCCTGGCCGCGAGAAATGG
ACCAGTGGCCATGGTCGGGTCAGCCGCAGTGGGTGGCATTCTCCTAGCTTTAATTGAAGGAGCTGGTATCTTGTTGACAA
GATTTGCCTCTGCACAGTTTCCCAACGGTCCTCAGTTTGCTGAAGACCCCTCCCAGTTGCCTGCCGCCCAGTTACCGTCC
TCACCTTTTGGAGACTACCGACAATATCAATAG

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 22 .95 RPM
SRP021940_embryo 29 .82 RPM
SRP021940_cerebellum 31 .00 RPM
SRP021940_testis 33 .12 RPM
SRP021940_placental_villous 25 .50 RPM
SRP021940_articular_cartilage 32 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012030 ortholog_one2one 4 retrogenes
retro_amel_1667, retro_amel_554, retro_amel_597, retro_amel_622,
Bos taurus ENSBTAG00000047059 ortholog_one2one 3 retrogenes
retro_btau_1098, retro_btau_1590, retro_btau_872,
Canis familiaris ENSCAFG00000010612 ortholog_one2one 1 retrogene
retro_cfam_646,
Choloepus hoffmanni ENSCHOG00000007440 ortholog_one2one 7 retrogenes
retro_chof_1346, retro_chof_1452, retro_chof_1693, retro_chof_1824, retro_chof_1849, retro_chof_375, retro_chof_435,
Callithrix jacchus ENSCJAG00000005709 ortholog_one2one 1 retrogene
retro_cjac_1651,
Dasypus novemcinctus ENSDNOG00000006389 ortholog_one2one 7 retrogenes
retro_dnov_1113, retro_dnov_1420, retro_dnov_1806, retro_dnov_2586, retro_dnov_273, retro_dnov_274, retro_dnov_814,
Dipodomys ordii ENSDORG00000013467 ortholog_one2one 4 retrogenes
retro_dord_160, retro_dord_170, retro_dord_536, retro_dord_76,
Echinops telfairi ENSETEG00000006334 ortholog_one2one 6 retrogenes
retro_etel_1179, retro_etel_1356, retro_etel_1809, retro_etel_1958, retro_etel_2211, retro_etel_820,
Homo sapiens ENSG00000134375 ortholog_one2one 1 retrogene
retro_hsap_279,
Loxodonta africana ENSLAFG00000017314 ortholog_one2one 1 retrogene
retro_lafr_724,
Myotis lucifugus ENSMLUG00000006569 ortholog_one2one 1 retrogene
retro_mluc_585,
Macaca mulatta ENSMMUG00000001924 ortholog_one2one 1 retrogene
retro_mmul_562,
Monodelphis domestica ENSMODG00000000517 ortholog_one2one 2 retrogenes
retro_mdom_1007, retro_mdom_381,
Mustela putorius furo ENSMPUG00000010908 ortholog_one2one 3 retrogenes
retro_mputfur_1455, retro_mputfur_318, retro_mputfur_598,
Mus musculus ENSMUSG00000062580 ortholog_one2one 1 retrogene
retro_mmus_3045,
Nomascus leucogenys ENSNLEG00000018089 ortholog_one2one 1 retrogene
retro_nleu_1490,
Oryctolagus cuniculus ENSOCUG00000007498 ortholog_one2one 3 retrogenes
retro_ocun_1293, retro_ocun_493, retro_ocun_651,
Otolemur garnettii ENSOGAG00000006176 ortholog_one2many 1 retrogene
retro_ogar_77,
Pongo abelii ENSPPYG00000000356 ortholog_one2one 1 retrogene
retro_pabe_390,
Pan troglodytes ENSPTRG00000001842 ortholog_one2one 2 retrogenes
retro_ptro_232, retro_ptro_671,
Rattus norvegicus ENSRNOG00000007040 ortholog_one2many 1 retrogene
retro_rnor_1417,
Sorex araneus ENSSARG00000008807 ortholog_one2one 1 retrogene
retro_sara_270,
Tupaia belangeri ENSTBEG00000010939 ortholog_one2one 7 retrogenes
retro_tbel_1882, retro_tbel_2869, retro_tbel_2940, retro_tbel_3759, retro_tbel_4197, retro_tbel_4387, retro_tbel_749,
Tarsius syrichta ENSTSYG00000011606 ortholog_one2one 6 retrogenes
retro_tsyr_1396, retro_tsyr_1512, retro_tsyr_1631, retro_tsyr_1777, retro_tsyr_1920, retro_tsyr_447,
Tursiops truncatus ENSTTRG00000005973 ortholog_one2one 4 retrogenes
retro_ttru_1044, retro_ttru_1527, retro_ttru_197, retro_ttru_368,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_262 69.71 100.00
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2. retro_ecab_611 87.25 59.41
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3. retro_ecab_901 92.35 100.00
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4. retro_ecab_909 88.24 59.41
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5. retro_ecab_1036 87.25 59.41
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6. retro_ecab_1044 88.24 59.41
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Download FASTA sequences of all ENSECAG00000021816 retrocopies