RetrogeneDB ID: | retro_ecab_901 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 6:39159618..39160128(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TIMM17A | ||
Ensembl ID: | ENSECAG00000021816 | ||
Aliases: | None | ||
Description: | translocase of inner mitochondrial membrane 17 homolog A (yeast) [Source:HGNC Symbol;Acc:17315] |
Percent Identity: | 92.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | EEYVREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGG |
EEY.REPCP.RIVDDCGG.FTM.TIGG.IFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGG | |
Retrocopy | EEYTREPCPGRIVDDCGGVFTMDTIGGCIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGG |
Parental | LFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAVGGILLALIEGAGILLTRFASAQF |
LFS.IDCSMVQVRGKEDP.NSIT.GALTGAILA.RNGPVAMVGSAA.GGILLALIEGAGILLTRFASAQF | |
Retrocopy | LFSTIDCSMVQVRGKEDP*NSITGGALTGAILATRNGPVAMVGSAAMGGILLALIEGAGILLTRFASAQF |
Parental | PNGPQFAEDPSQLPAAQLPSSPFGDYRQYQ |
PNGPQFAED.SQLP.A.LPSSPFGDYRQYQ | |
Retrocopy | PNGPQFAEDRSQLPSARLPSSPFGDYRQYQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 32 .94 RPM |
SRP021940_cerebellum | 0 .00 RPM | 31 .00 RPM |
SRP021940_embryo | 0 .10 RPM | 29 .82 RPM |
SRP021940_placental_villous | 0 .05 RPM | 25 .50 RPM |
SRP021940_synovial_membrane | 0 .08 RPM | 22 .95 RPM |
SRP021940_testis | 0 .06 RPM | 33 .12 RPM |