RetrogeneDB ID: | retro_cjac_1651 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 18:45805443..45805807(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TIMM17A | ||
Ensembl ID: | ENSCJAG00000005709 | ||
Aliases: | None | ||
Description: | translocase of inner mitochondrial membrane 17 homolog A (yeast) [Source:HGNC Symbol;Acc:17315] |
Percent Identity: | 64.75 % |
Parental protein coverage: | 70.76 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSMIDCSMVQVRGKED |
GAFT..TIG.GIFQ.IK.F.N.PVG.NH.L..SLTAIK..APQLGGS.AVW.GLF..IDC.M.Q...K.D | |
Retrocopy | GAFTINTIGCGIFQSIKSFHNFPVGINHKLQRSLTAIKIQAPQLGGSPAVWRGLFLLIDCRMAQAK*KAD |
Parental | PWNSITSGALTGAILAARNGPVAMVGSA-AMGGILLALIEGAGILLTRFASA |
PWNS.T.G.LT.A.LA.RNGPVA..GSA....GI.L.L.EG..IL.T..ASA | |
Retrocopy | PWNSDTNGSLTEATLATRNGPVAIIGSA>ETSGIFLVLTEGDIILVTKIASA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 15 .82 RPM |
SRP051959_heart | 0 .00 RPM | 13 .66 RPM |
SRP051959_kidney | 0 .00 RPM | 19 .15 RPM |
SRP051959_liver | 0 .00 RPM | 13 .65 RPM |
SRP051959_lung | 0 .00 RPM | 8 .90 RPM |
SRP051959_lymph_node | 0 .00 RPM | 8 .45 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 16 .73 RPM |
SRP051959_spleen | 0 .00 RPM | 8 .63 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_279 |
Pan troglodytes | retro_ptro_232 |
Pongo abelii | retro_pabe_390 |
Macaca mulatta | retro_mmul_562 |