RetrogeneDB ID: | retro_rnor_1417 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 19:9917918..9918198(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Timm17a | ||
Ensembl ID: | ENSRNOG00000007040 | ||
Aliases: | Timm17a, Tim17, Timm17 | ||
Description: | Mitochondrial import inner membrane translocase subunit Tim17-A [Source:UniProtKB/Swiss-Prot;Acc:O35092] |
Percent Identity: | 55.88 % |
Parental protein coverage: | 58.48 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | WGGLFSTIDCGMVQIRGK-EDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFA |
WGGLFST..C..VQ..G..E..W.S.T....TGAILA.RNGPVA..GSAA.....L...EGAG.LL..F. | |
Retrocopy | WGGLFSTNNCSVVQGGGR<EGAWYSATA-I*TGAILAVRNGPVATNGSAA----ILSFNEGAGNLL*GFV |
Parental | SAQ-FPNGPQFAEDHSQLPSSQLPSSPFGDYR |
SA..FP.GPQFAED..Q..S.QL.....GD.R | |
Retrocopy | SAH<FPSGPQFAEDPCQSSSIQL-THCLGDHR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 24 .73 RPM |
SRP017611_kidney | 0 .00 RPM | 34 .82 RPM |
SRP017611_liver | 0 .00 RPM | 7 .73 RPM |