RetrogeneDB ID: | retro_dnov_2586 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_88233:681..999(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TIMM17A | ||
Ensembl ID: | ENSDNOG00000006389 | ||
Aliases: | None | ||
Description: | translocase of inner mitochondrial membrane 17 homolog A (yeast) [Source:HGNC Symbol;Acc:17315] |
Percent Identity: | 72.73 % |
Parental protein coverage: | 61.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | SFAV-WGG-LFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAM-GGILLALIEGAGI |
SFAV.WG..LF.M.DC.MVQVRGK.DPW.SITSGALTG...AAR.GPVA..GSA.M.GGILLAL.EGAG. | |
Retrocopy | SFAV<WGVFLFPMFDCRMVQVRGKGDPWSSITSGALTGDKTAARSGPVALAGSAVM<GGILLALTEGAGT |
Parental | LLTRFASTQFPNGPQFVD-DPSQLPSTQL-PSSPFGDYRQ |
LLTRFAS.QFP.GP.F.D.D.SQL...QL..SSPFGDY.Q | |
Retrocopy | LLTRFASVQFPSGPWFTDEDLSQLLPIQL<TSSPFGDYQQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 19 .84 RPM |
SRP012922_cerebellum | 0 .14 RPM | 9 .35 RPM |
SRP012922_heart | 0 .00 RPM | 5 .80 RPM |
SRP012922_kidney | 0 .00 RPM | 5 .48 RPM |
SRP012922_liver | 0 .00 RPM | 4 .02 RPM |
SRP012922_lung | 0 .00 RPM | 6 .57 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 5 .71 RPM |
SRP012922_spleen | 0 .00 RPM | 10 .64 RPM |