RetrogeneDB ID: | retro_btau_872 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 2:67681735..67682247(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TIMM17A | ||
Ensembl ID: | ENSBTAG00000047059 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQL-GGSFAVW |
..EYA..PCP.RI.DDC.G.F.M..I.GGI.Q..KGF.NS..GV.HRL..SLTAIKTRA.QL.G.SFAV. | |
Retrocopy | IKEYAGPPCP*RIMDDCSGDFKMRSIDGGILQESKGFHNSLLGVKHRLGSSLTAIKTRALQL<GHSFAVG |
Parental | GGLFSMIDCSMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAVGGVLLALIEGAGILLTRFASA |
.GL.SM.D..MVQ.R.KEDP.NSI.S.A.T....AAR..PVAMVGSAA.G..LLAL.EGAGILLTRFASA | |
Retrocopy | RGLLSMNDYNMVQVREKEDP*NSIKSDAFTRTMMAARKVPVAMVGSAAMGAILLALVEGAGILLTRFASA |
Parental | QFPNGPPFAEDPSQLPSAQLPASPFGEYRQYQ |
..PN....AE.PS.LPSAQL....FG.Y.QYQ | |
Retrocopy | PLPNDALLAEGPSELPSAQLLSLHFGDYQQYQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 0 .87 RPM |
ERP005899_muscle | 0 .00 RPM | 12 .56 RPM |
SRP017611_brain | 0 .00 RPM | 13 .29 RPM |
SRP017611_kidney | 0 .00 RPM | 20 .57 RPM |
SRP017611_liver | 0 .00 RPM | 4 .91 RPM |
SRP030211_testis | 0 .01 RPM | 27 .26 RPM |