RetrogeneDB ID: | retro_ocun_651 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 13:60916424..60916747(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TIMM17A | ||
Ensembl ID: | ENSOCUG00000007498 | ||
Aliases: | None | ||
Description: | translocase of inner mitochondrial membrane 17 homolog A (yeast) [Source:HGNC Symbol;Acc:17315] |
Percent Identity: | 68.14 % |
Parental protein coverage: | 65.5 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSF-AVW |
.E.YA..PCPW.IV.DCG.AFTM....G...QAI.GF..SPV.VNHRL..SLT.IK..AP.LG....AVW | |
Retrocopy | LEVYAQQPCPW*IVNDCGRAFTM----GSNSQAISGFHSSPVEVNHRLQESLTVIKIKAPYLGNTL<AVW |
Parental | GGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAM |
GGLFS.IDCS.VQVRGKEDPW.S.TSG.LTG.IL.ARNGPVA. | |
Retrocopy | GGLFSTIDCSVVQVRGKEDPWISSTSGGLTGVILEARNGPVAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 34 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 23 .92 RPM |
SRP017611_liver | 0 .00 RPM | 2 .70 RPM |