RetrogeneDB ID: | retro_etel_1396 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_259201:2561..2856(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL36 | ||
Ensembl ID: | ENSETEG00000012943 | ||
Aliases: | None | ||
Description: | ribosomal protein L36 [Source:HGNC Symbol;Acc:13631] |
Percent Identity: | 60. % |
Parental protein coverage: | 94.29 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAVGLDKGHKVTKNVSKPRHSRRRGXXXXXXXXXXXMIREVCGFAPYERRAMELLKVSKDKRALKFIKKR |
MAVGL.KGHKV.KNVSK.RHSR..G..............EVCGFAP.E..AM.LL.VS..K.AL.FIKK. | |
Retrocopy | MAVGLNKGHKVNKNVSKTRHSRCPGRLTDHT*LAQGKM*EVCGFAPCE-WAMQLLHVSNNKQALHFIKKL |
Parental | VGTHIRAKRKREELSNV-LAAMRKAAAKKD |
.G....AKRK.E.LSNV.LA..RK.AAKKD | |
Retrocopy | LGKDSGAKRKKELLSNV>LAPKRKEAAKKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012349 | 6 retrocopies | |
Bos taurus | ENSBTAG00000001794 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000017072 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000005163 | 8 retrocopies | |
Echinops telfairi | ENSETEG00000012943 | 15 retrocopies | |
Felis catus | ENSFCAG00000011838 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000015365 | 11 retrocopies | |
Latimeria chalumnae | ENSLACG00000015161 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002743 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000001275 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000006166 | 6 retrocopies | |
Mus musculus | ENSMUSG00000057863 | 9 retrocopies | |
Otolemur garnettii | ENSOGAG00000027049 | 12 retrocopies | |
Pongo abelii | ENSPPYG00000009431 | 12 retrocopies | |
Rattus norvegicus | ENSRNOG00000033473 | 5 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000013492 | 8 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000020518 | 2 retrocopies |