RetrogeneDB ID: | retro_fcat_1216 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:139854825..139855158(-) | ||
Located in intron of: | ENSFCAG00000025089 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL36 | ||
Ensembl ID: | ENSFCAG00000011838 | ||
Aliases: | None | ||
Description: | ribosomal protein L36 [Source:HGNC Symbol;Acc:13631] |
Percent Identity: | 76.11 % |
Parental protein coverage: | 99.11 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | PSASAAMALRYPMAVGLNKGHKVTKNVSKPRHSR-RRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKV |
P..S..MAL.YPMAVG.N.GHKVT.N..KPRHS..RR..LTKHTKF.R.MIREVCGFAPYE..AMELLKV | |
Retrocopy | PLRSSSMALSYPMAVGFNQGHKVTENANKPRHSE>RRRCLTKHTKFMRHMIREVCGFAPYEKHAMELLKV |
Parental | SKDKRALKFIKKRVGTHIRAKRKREELSNVL-AAMRKAAAKKD |
.KDK..LKFIKKRV..HI.AKRKREELSNVL.AA.RK.AAKKD | |
Retrocopy | FKDKCVLKFIKKRVWIHIQAKRKREELSNVL<AATRKVAAKKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .84 RPM |
SRP017611_kidney | 0 .00 RPM | 31 .12 RPM |
SRP017611_liver | 0 .00 RPM | 14 .96 RPM |