RetrogeneDB ID: | retro_fcat_1168 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:34995530..34995853(-) | ||
Located in intron of: | ENSFCAG00000027941 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL36 | ||
Ensembl ID: | ENSFCAG00000011838 | ||
Aliases: | None | ||
Description: | ribosomal protein L36 [Source:HGNC Symbol;Acc:13631] |
Percent Identity: | 71.56 % |
Parental protein coverage: | 96.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SAAMALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRA-MELLKVSKD |
.AA.AL.YPMA.GLNKGH.VTKNVSK.R.S.....LTKHT.FV..MIREV.GFA.YE..A.MELLKVSKD | |
Retrocopy | AAAIALCYPMAGGLNKGHEVTKNVSKLRYSCCHRCLTKHTRFVWYMIREVYGFASYEQPA<MELLKVSKD |
Parental | KRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAKKD |
..A.KFIKK.V.THI.AKRKREELSN.L.AM.K..AKKD | |
Retrocopy | NGAIKFIKKKVETHIHAKRKREELSNMLVAMGKVTAKKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .84 RPM |
SRP017611_kidney | 0 .00 RPM | 31 .12 RPM |
SRP017611_liver | 0 .00 RPM | 14 .96 RPM |