RetrogeneDB ID:

retro_etel_196

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:GeneScaffold_3398:12721..13101(+)
Located in intron of:ENSETEG00000017390
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UBA52
Ensembl ID:ENSETEG00000003392
Aliases:None
Description:ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:HGNC Symbol;Acc:12458]


Retrocopy-Parental alignment summary:






>retro_etel_196
ATGCAGATCTTTGTGAAGACCCTGACGGCCAAGACCATCACCCTTGAGGTTGAGCCCAGCGACACCATCGAGAATGTCAA
AGCCAAAATCCAAGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATTTTTGCTGGTAAACAGCTGGAGGATGGCC
GCACTCTCTCGGACTACAAATCCAGAAAGAGTCCACCCTGAACTTGGTGCTGCGTCTGCGTGGTGGTATCATCGAGCCGT
CCCTGCGCCAGCTGGCCCAGAAGTACAACTGCGACAAGATGATCTGCCGCAAGTGTTATGCTCGCCTTCACCCCCGTGCA
GTTAACTGCCGCAAGAAGTGTGGCCACACCAACAACCTGCGTCCCAAGAAGAAGGTCAAA

ORF - retro_etel_196 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.12 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHL
MQIFVKTLT.KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY..IQKESTL.L
RetrocopyMQIFVKTLTAKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY<QIQKESTLNL
ParentalVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK
VLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCR.KKCGHTNNLRPKKKVK
RetrocopyVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCR-KKCGHTNNLRPKKKVK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_196 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 98 retrocopies.

Species Parental gene accession Retrocopies number
Cavia porcellus ENSCPOG000000003513 retrocopies
Echinops telfairi ENSETEG00000003392 35 retrocopies
Gorilla gorilla ENSGGOG000000046308 retrocopies
Latimeria chalumnae ENSLACG000000081321 retrocopy
Macropus eugenii ENSMEUG000000131595 retrocopies
Myotis lucifugus ENSMLUG000000295945 retrocopies
Macaca mulatta ENSMMUG000000160857 retrocopies
Mustela putorius furoENSMPUG000000155278 retrocopies
Mus musculus ENSMUSG000000901373 retrocopies
Pongo abelii ENSPPYG000000097462 retrocopies
Pteropus vampyrus ENSPVAG0000002421719 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000046781 retrocopy
Xiphophorus maculatus ENSXMAG000000039111 retrocopy



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