Parental gene:

UBA52, ENSCPOG00000000351

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_72:8139837..8141294(+)


>ENSCPOG00000000351
ATGCAGATATTCGTGAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCCAGCGACACCATCGAGAATGTCAA
AGCCAAAATCCAAGACAAGGAAGGCATCCCACCTGACCAGCAGCGCCTGATATTTGCCGGCAAACAGCTGGAGGACGGTC
GGACTCTCTCGGACTACAACATTCAGAAAGAGTCTACCCTGCACCTGGTGCTGCGCCTGCGAGGTGGGATCATCGAGCCG
TCTCTGCGCCAGCTGGCGCAAAAGTACAACTGTGACAAGATGATCTGCCGCAAGTGCTATGCCCGCCTGCATCCCCGTGC
CGTCAACTGCCGCAAGAAGAAGTGTGGCCACACCAACAACTTGCGCCCCAAGAAGAAGGTCAAGTAG

Library Parental gene expression (RPM)
SRP017611_liver 86 .66 RPM
SRP017611_kidney 140 .49 RPM
SRP017611_brain 77 .01 RPM
SRP040447_lung 174 .70 RPM
SRP040447_skeletal_muscle 175 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000003392 ortholog_one2one 35 retrogenes
retro_etel_1121, retro_etel_113, retro_etel_1165, retro_etel_1229, retro_etel_1520, retro_etel_1521, retro_etel_1598, retro_etel_1618, retro_etel_1623, retro_etel_1644, retro_etel_1657, retro_etel_1707, retro_etel_1709, retro_etel_174, retro_etel_1756, retro_etel_1760, retro_etel_1785, retro_etel_1854, retro_etel_196, retro_etel_2027, retro_etel_2101, retro_etel_2123, retro_etel_2158, retro_etel_2166, retro_etel_268, retro_etel_376, retro_etel_386, retro_etel_406, retro_etel_660, retro_etel_690, retro_etel_70, retro_etel_755, retro_etel_807, retro_etel_843, retro_etel_859,
Gorilla gorilla ENSGGOG00000004630 ortholog_one2one 8 retrogenes
retro_ggor_1021, retro_ggor_1045, retro_ggor_1265, retro_ggor_1835, retro_ggor_2579, retro_ggor_2687, retro_ggor_2782, retro_ggor_905,
Latimeria chalumnae ENSLACG00000008132 ortholog_many2many 1 retrogene
retro_lcha_11,
Macropus eugenii ENSMEUG00000013159 ortholog_one2one 5 retrogenes
retro_meug_1812, retro_meug_1868, retro_meug_441, retro_meug_513, retro_meug_750,
Myotis lucifugus ENSMLUG00000029594 ortholog_one2one 5 retrogenes
retro_mluc_1995, retro_mluc_2057, retro_mluc_2203, retro_mluc_44, retro_mluc_829,
Macaca mulatta ENSMMUG00000016085 ortholog_one2one 7 retrogenes
retro_mmul_1184, retro_mmul_1580, retro_mmul_1625, retro_mmul_2183, retro_mmul_2311, retro_mmul_232, retro_mmul_896,
Mustela putorius furo ENSMPUG00000015527 possible_ortholog 8 retrogenes
retro_mputfur_1059, retro_mputfur_1119, retro_mputfur_1126, retro_mputfur_382, retro_mputfur_516, retro_mputfur_713, retro_mputfur_78, retro_mputfur_945,
Mus musculus ENSMUSG00000090137 ortholog_one2one 3 retrogenes
retro_mmus_101, retro_mmus_129, retro_mmus_31,
Pongo abelii ENSPPYG00000009746 possible_ortholog 2 retrogenes
retro_pabe_111, retro_pabe_3291,
Pteropus vampyrus ENSPVAG00000024217 ortholog_one2one 19 retrogenes
retro_pvam_1029, retro_pvam_1102, retro_pvam_1146, retro_pvam_1164, retro_pvam_1320, retro_pvam_1325, retro_pvam_1361, retro_pvam_1434, retro_pvam_1447, retro_pvam_211, retro_pvam_327, retro_pvam_517, retro_pvam_528, retro_pvam_600, retro_pvam_632, retro_pvam_655, retro_pvam_749, retro_pvam_987, retro_pvam_994,
Sorex araneus ENSSARG00000000984 possible_ortholog 11 retrogenes
retro_sara_145, retro_sara_164, retro_sara_192, retro_sara_256, retro_sara_281, retro_sara_331, retro_sara_344, retro_sara_599, retro_sara_67, retro_sara_687, retro_sara_94,
Ictidomys tridecemlineatus ENSSTOG00000004678 possible_ortholog 1 retrogene
retro_itri_49,
Xiphophorus maculatus ENSXMAG00000003911 ortholog_one2many 1 retrogene
retro_xmac_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1454 57.43 77.34
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2. retro_cpor_1471 53.52 55.47
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3. retro_cpor_1502 72.63 74.22
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Download FASTA sequences of all ENSCPOG00000000351 retrocopies