RetrogeneDB ID: | retro_cpor_1471 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_9:28954361..28954568(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBA52 | ||
Ensembl ID: | ENSCPOG00000000351 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 53.52 % |
Parental protein coverage: | 55.47 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYN |
DTI.NVK.KIQD.EG..PDQQ.LI.A.K.....R....YNIQKESTL.L.L...GGI...S...L..... | |
Retrocopy | DTIKNVKIKIQDEEGVSPDQQHLILASKGCRTARLY--YNIQKESTLYLMLHGQGGIVQRSKSALSEAQS |
Parental | C |
C | |
Retrocopy | C |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 77 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 140 .49 RPM |
SRP017611_liver | 0 .00 RPM | 86 .66 RPM |
SRP040447_lung | 0 .00 RPM | 174 .70 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 175 .45 RPM |