RetrogeneDB ID: | retro_sscr_960 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 8:10946812..10947054(+) | ||
Located in intron of: | ENSSSCG00000008745 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL36 | ||
Ensembl ID: | ENSSSCG00000030010 | ||
Aliases: | None | ||
Description: | ribosomal protein L36 [Source:HGNC Symbol;Acc:13631] |
Percent Identity: | 56.1 % |
Parental protein coverage: | 77.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRA-LKFIKKR |
AV.L.........V.KPR.....G.LTKHTK...D.I.EVC.F...ERRA.E.LKVS.D..A.LKFI.K. | |
Retrocopy | AVALGSPAALGHKVGKPRQGHHCGHLTKHTKVMQDVIQEVCHFVTNERRAKERLKVSEDRWA<LKFIEKS |
Parental | VGTHIRAKRKRE |
VGTHI.AK.KRE | |
Retrocopy | VGTHIHAKGKRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 193 .12 RPM |
SRP014902_testis | 0 .00 RPM | 515 .29 RPM |
SRP018288_heart | 0 .00 RPM | 164 .23 RPM |
SRP018288_kidney | 0 .00 RPM | 193 .27 RPM |
SRP018288_liver | 0 .00 RPM | 179 .42 RPM |
SRP018288_lung | 0 .00 RPM | 352 .62 RPM |
SRP018856_adipose | 0 .00 RPM | 288 .10 RPM |
SRP035408_brain | 0 .00 RPM | 198 .53 RPM |
SRP035408_liver | 0 .00 RPM | 186 .64 RPM |