RetrogeneDB ID: | retro_fcat_2003 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:83851714..83852083(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000026430 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK |
MAPAKKGG.KKK..SAIN.VVTR.YTINI.KRIHGVGFKK.APRALKE.RK.AMKEMGTPDVRIDTRLNK | |
Retrocopy | MAPAKKGG-KKKWCSAINKVVTRAYTINIPKRIHGVGFKKHAPRALKETRKLAMKEMGTPDVRIDTRLNK |
Parental | AVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN |
.V..KG.RN.PY...VRLSRKRNEDEDSPNKLY.LVTY.P.TTFKNLQTVNVDEN | |
Retrocopy | SV*TKGKRNAPY-VCVRLSRKRNEDEDSPNKLYILVTYIPATTFKNLQTVNVDEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 57 .85 RPM |
SRP017611_kidney | 0 .00 RPM | 155 .41 RPM |
SRP017611_liver | 0 .00 RPM | 108 .77 RPM |