RetrogeneDB ID: | retro_fcat_190 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:150565431..150565746(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000026430 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.14 % |
Parental protein coverage: | 85.6 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAP-RALKEIRKFAMKEMGTPDVRIDTRLN |
MA.AKKG...K.G.SAIN.VVT.EY.INIHK.IH..GF....P...LKEI.KFAMKEMGTP.V.IDT.LN | |
Retrocopy | MALAKKGVQNKNGCSAINVVVTTEYNINIHKCIH--GFQEVCP>QTLKEIQKFAMKEMGTPKVYIDTMLN |
Parental | KAVWAKGI-RNVPYRIRVRLSRKRNEDEDSPNKLYTLVT |
KAVWA.GI.RN....I.V.LSRK...D....NKLYTLVT | |
Retrocopy | KAVWAVGI<RNIS*YICVQLSRKHDKDKYLSNKLYTLVT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 57 .85 RPM |
SRP017611_kidney | 0 .00 RPM | 155 .41 RPM |
SRP017611_liver | 0 .00 RPM | 108 .77 RPM |