RetrogeneDB ID: | retro_rnor_101 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:157975074..157975452(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000029493 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl31 | ||
Ensembl ID: | ENSRNOG00000013508 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L31 [Source:UniProtKB/Swiss-Prot;Acc:P62902] |
Percent Identity: | 86.4 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK |
MAPAKKG.EKKKG..AI..VVTREYTINIHK.IHGVGFKK.AP..LKEIR.FA.KEMGTPDVRIDTRLNK | |
Retrocopy | MAPAKKGSEKKKGHPAIHDVVTREYTINIHKHIHGVGFKKHAPQSLKEIRNFAKKEMGTPDVRIDTRLNK |
Parental | AVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN |
AVWAKGI.NVPYR.RVRLSRK.NEDEDSPNKLYTL.T.VPVTTFKNLQ.VNVDEN | |
Retrocopy | AVWAKGIKNVPYRTRVRLSRKHNEDEDSPNKLYTLETFVPVTTFKNLQMVNVDEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 51 .91 RPM |
SRP017611_kidney | 0 .00 RPM | 51 .36 RPM |
SRP017611_liver | 0 .00 RPM | 40 .41 RPM |