RetrogeneDB ID: | retro_rnor_1809 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:101436783..101437057(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl31 | ||
Ensembl ID: | ENSRNOG00000013508 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L31 [Source:UniProtKB/Swiss-Prot;Acc:P62902] |
Percent Identity: | 85.87 % |
Parental protein coverage: | 72.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEI-RKFAMKEMGTPDVRIDTRLNKAVWAKGIR |
.KKGRSAINEVVTREYTINIHK...GV.FKKRA.RA.KEI.R.FAMKEMGTPDV.IDTRLNKAVWAK.IR | |
Retrocopy | EKKGRSAINEVVTREYTINIHKCNYGVDFKKRALRAFKEI>RIFAMKEMGTPDVSIDTRLNKAVWAKEIR |
Parental | NVPYRIRVRLSRKRNEDEDSPN |
NV.YRIRVRLSRKRNEDEDS.N | |
Retrocopy | NVLYRIRVRLSRKRNEDEDSSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 51 .91 RPM |
SRP017611_kidney | 0 .00 RPM | 51 .36 RPM |
SRP017611_liver | 0 .00 RPM | 40 .41 RPM |