RetrogeneDB ID: | retro_fcat_725 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:106616424..106616750(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000026430 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.39 % |
Parental protein coverage: | 87.2 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | KKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKE-MGTPDVRIDTRLNKAVW |
K.G...KKG.SAI..V.TREYTINIHK.IH.V.FKK.AP.ALKEI.K.AMKE...TPDV.ID.RL.KAV. | |
Retrocopy | KEG*QRKKGCSAIDKVMTREYTINIHKHIHRVVFKKCAPQALKEIQKIAMKE>VKTPDVFIDIRLHKAV* |
Parental | AKGI-RNVPY-RIRVRLSRKRNEDEDSPNKLYTLVTYVPVTT |
AKGI.RNVPY..I...LSRK.NE.EDSPN.........P..T | |
Retrocopy | AKGI<RNVPY<PIHEWLSRKCNEAEDSPNSKH*PMYLSPLPT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 57 .85 RPM |
SRP017611_kidney | 0 .00 RPM | 155 .41 RPM |
SRP017611_liver | 0 .00 RPM | 108 .77 RPM |