RetrogeneDB ID: | retro_itri_862 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393334.1:5539695..5540027(+) | ||
Located in intron of: | ENSSTOG00000009836 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP3S1 | ||
Ensembl ID: | ENSSTOG00000011759 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 3, sigma 1 subunit [Source:HGNC Symbol;Acc:2013] |
Percent Identity: | 85.71 % |
Parental protein coverage: | 57.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SESELG-ILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLE |
SESEL..ILDLIQVF.ETLDKCFEN..ELDLIF.VDKVHNILAEMVM.GMVLETNM.EIVTQID.QNKLE | |
Retrocopy | SESELS<ILDLIQVFMETLDKCFENAYELDLIFQVDKVHNILAEMVMEGMVLETNMDEIVTQIDVQNKLE |
Parental | KSEAGLAGAPARAVSAVKNMNLPEIPRNINIGDISIKVPNLP |
K.EAGL.GAPA...SAV.NMNLPEI.RNINIGDISIKVPNLP | |
Retrocopy | KPEAGLVGAPAYVLSAVNNMNLPEILRNINIGDISIKVPNLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |