RetrogeneDB ID: | retro_cpor_1528 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_93:5898794..5899184(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP3S1 | ||
Ensembl ID: | ENSCPOG00000007192 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.94 % |
Parental protein coverage: | 68.91 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MIKAILIFNNHGKPRLS-KFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYA |
MIKAIL.FNNH.KP.LS.KFYQP..ED..Q..IRET.HLVSKRDENVCN.L.G.LLIG.SDNK.I.RH.. | |
Retrocopy | MIKAILTFNNHRKPQLS<KFYQP*GED-KQELIRETSHLVSKRDENVCNLLRG-LLIGRSDNKVICRHNT |
Parental | TLYFVFCVDSSESELGILDLIQV-FVETLDKCFENVCELDLIFHVDKVHNILAEMVM-GGMVLETN |
TLYFVFCV.SSE.ELGI.D.IQV.FVETLDKCFENV.ELDLIFHV.KV.NIL.EMVM.GG.VLETN | |
Retrocopy | TLYFVFCVVSSEGELGI*DIIQV<FVETLDKCFENVYELDLIFHVNKVYNILVEMVM<GGRVLETN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 18 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .22 RPM |
SRP017611_liver | 0 .00 RPM | 10 .66 RPM |
SRP040447_lung | 0 .08 RPM | 9 .21 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 2 .91 RPM |