RetrogeneDB ID: | retro_mmus_3155 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 8:94405210..94405789(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000094257 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ap3s1 | ||
Ensembl ID: | ENSMUSG00000024480 | ||
Aliases: | Ap3s1, [s]3A | ||
Description: | adaptor-related protein complex 3, sigma 1 subunit [Source:MGI Symbol;Acc:MGI:1337062] |
Percent Identity: | 97.93 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYAT |
MIKAILIF.NHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVC.FLEGGLLIGGSDNKLIYRHYAT | |
Retrocopy | MIKAILIFSNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCHFLEGGLLIGGSDNKLIYRHYAT |
Parental | LYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQ |
LYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVM.GMVLETNMNEIVTQ | |
Retrocopy | LYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMRGMVLETNMNEIVTQ |
Parental | IDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIGDISIKVPNLPSFK |
IDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIGDISIKVPNLPS.K | |
Retrocopy | IDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIGDISIKVPNLPSLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 11 .92 RPM |
SRP007412_cerebellum | 0 .09 RPM | 6 .21 RPM |
SRP007412_heart | 0 .00 RPM | 2 .68 RPM |
SRP007412_kidney | 0 .08 RPM | 4 .22 RPM |
SRP007412_liver | 0 .41 RPM | 5 .38 RPM |
SRP007412_testis | 0 .00 RPM | 11 .85 RPM |