RetrogeneDB ID: | retro_pvam_422 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_3032:3816..4393(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP3S1 | ||
Ensembl ID: | ENSPVAG00000006575 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 3, sigma 1 subunit [Source:HGNC Symbol;Acc:2013] |
Percent Identity: | 81.54 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYAT |
M.K..L.F...GKP.LSKFYQPYSEDT.QQIIRETF.LV.......CNFLEGGLLIGGSDNKLI.RHYA. | |
Retrocopy | MTKVVLTFDSYGKP*LSKFYQPYSEDT*QQIIRETFYLVFEK*K--CNFLEGGLLIGGSDNKLIHRHYAM |
Parental | LYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMG-GMVLE-TNMNEIV |
LYFVFCVDSSESELG..DLIQVFVETLD.CFENVC.LDLIFHVDKV.NILAEMVM..G...E.TNMNEIV | |
Retrocopy | LYFVFCVDSSESELGVSDLIQVFVETLDNCFENVCVLDLIFHVDKVQNILAEMVMAPGNGIE>TNMNEIV |
Parental | TQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIGDISIKVPNLPSFK |
TQ.DAQN.LEKSEAGLAGAPARAVSAVKNMNLP.IPRNIN.G.ISIKVPNLP.FK | |
Retrocopy | TQTDAQN*LEKSEAGLAGAPARAVSAVKNMNLPGIPRNINFGNISIKVPNLPFFK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |