RetrogeneDB ID: | retro_fcat_680 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:4957815..4958145(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP3S1 | ||
Ensembl ID: | ENSFCAG00000029920 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 3, sigma 1 subunit [Source:HGNC Symbol;Acc:2013] |
Percent Identity: | 56.14 % |
Parental protein coverage: | 65.29 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | ETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRH-YATLYFVFCVDSSESELGILDLIQ-VFVETLDK-C |
E.F.L..K.DENVC.FLEGG.L..GS......R.......FVF.VDSSESE.GI...I..VF.ETLDK.. | |
Retrocopy | EIFRLPRKEDENVCSFLEGGSLLRGSNKLTYGRD<HTAFCFVFHVDSSESEVGI*NVIW<VFLETLDK<V |
Parental | FENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQ |
F..V.E.D.I..VDKV...LAE..M...VLETNMNEIV...DAQ | |
Retrocopy | FLKVSEPDFILPVDKVDGMLAETGMRRTVLETNMNEIVPFVDAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 44 .65 RPM |
SRP017611_kidney | 0 .41 RPM | 18 .55 RPM |
SRP017611_liver | 0 .10 RPM | 20 .72 RPM |