RetrogeneDB ID: | retro_pvam_1232 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_46234:1429..1891(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP3S1 | ||
Ensembl ID: | ENSPVAG00000006575 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 3, sigma 1 subunit [Source:HGNC Symbol;Acc:2013] |
Percent Identity: | 78.21 % |
Parental protein coverage: | 79.27 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | LVSKR-DENVCNFLEG-GLLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVC |
.VSKR.D.NV.NFLE..GLLIGGS.NKLIY.HYAT.Y.VF.VDSSESEL.IL.LIQVFVE..DKCFENV. | |
Retrocopy | MVSKR<D*NVFNFLEM>GLLIGGSHNKLIYQHYATFYVVFYVDSSESELDILGLIQVFVEISDKCFENVH |
Parental | ELDLIFHVDKVHNILAEMVMGGMVLE-TNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIP |
ELDLI..VDKVHNILAEMV.G......TNM.EIVTQIDAQNK.EKSE.GL..APA.AV.AVKNMNLPEIP | |
Retrocopy | ELDLILYVDKVHNILAEMVIGEWYWRPTNMDEIVTQIDAQNKVEKSETGLVIAPAYAV*AVKNMNLPEIP |
Parental | RNINIGDISIKVPNLP |
RNIN.GDIS.KVPNLP | |
Retrocopy | RNINTGDISTKVPNLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |