RetrogeneDB ID: | retro_fcat_151 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:37884729..37885008(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP3S1 | ||
Ensembl ID: | ENSFCAG00000029920 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 3, sigma 1 subunit [Source:HGNC Symbol;Acc:2013] |
Percent Identity: | 80.65 % |
Parental protein coverage: | 54.71 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | FVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAV |
FVETLDK.FENVCELDLI..V.KVHNILAEMVM..MVLET.MNEIVT.I..QNKLEKSEAG.AG..A.AV | |
Retrocopy | FVETLDKRFENVCELDLIYNVGKVHNILAEMVME*MVLETKMNEIVTEIHEQNKLEKSEAGFAGSLACAV |
Parental | SAVKNMNLPEIPRNINIGDISIK |
SAVKNMNLPEIPRNI...D.SIK | |
Retrocopy | SAVKNMNLPEIPRNIDTADSSIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 44 .65 RPM |
SRP017611_kidney | 0 .00 RPM | 18 .55 RPM |
SRP017611_liver | 0 .00 RPM | 20 .72 RPM |